Re: [Freesurfer] creating a mask for the thalamus parcellations

2018-06-06 Thread Erik O'Hanlon
e 2018 12:35:55 To: Freesurfer support list Subject: Re: [Freesurfer] creating a mask for the thalamus parcellations External Email - Use Caution Thanks Bruce and Eugenio. it will be great to have so looking forward to it. Cheers Erik From:

Re: [Freesurfer] creating a mask for the thalamus parcellations

2018-06-01 Thread Erik O'Hanlon
: Freesurfer support list Subject: Re: [Freesurfer] creating a mask for the thalamus parcellations External Email - Use Caution I probably shouldn’t say this, but I will, anyway: It’s coming soon! -- Juan Eugenio Iglesias ERC Senior Research Fellow Centre for Medical Image Computing (CMIC

Re: [Freesurfer] creating a mask for the thalamus parcellations

2018-05-31 Thread Iglesias Gonzalez, Eugenio
External Email - Use Caution I probably shouldn’t say this, but I will, anyway: It’s coming soon! -- Juan Eugenio Iglesias ERC Senior Research Fellow Centre for Medical Image Computing (CMIC) University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/ O

Re: [Freesurfer] creating a mask for the thalamus parcellations

2018-05-31 Thread Bruce Fischl
not yet, sorry. We are working on it Bruce On Thu, 31 May 2018, Erik O'Hanlon wrote: >External Email - Use Caution > > Dear FS Experts, > > > Is it possible to use the labels found in the FreesurferColourLUT.txt for the > Thalamus parcellations (8001-8014) using the mri_extract_label

[Freesurfer] creating a mask for the thalamus parcellations

2018-05-31 Thread Erik O'Hanlon
External Email - Use Caution Dear FS Experts, Is it possible to use the labels found in the FreesurferColourLUT.txt for the Thalamus parcellations (8001-8014) using the mri_extract_label command? If so, what is the correct input file to use ? mri_extract_label 8001 L_Ant_tha