Hi all,
I would like to follow up on my question!
So, I figured it's not really necessary to move the labels into their
native space, since my final goal is to have the ROIs in the DTI (B0)
space. So, I directly registered the nu-corrected output from freeSurfer
to my B0 image, am I correct?
Thanks! so this is the command I've used:
mri_aparc2aseg --annot freeSurfer_lobes --s P2 --o
freeSurfer_Results/P2/labels/freeSurfer_lobes.nii.gz
a couple of question I have now:
1. what lables (numbers) correspond to the 5 main lobes? looking at the
"FreeSurferColorLUT.txt", I'm assuming the l
Hi all,
I want to convert the cortical labels I get in freeSurfer to volumetric
ROIs in the subject space and I've followed the steps mentioned in:
http://brainybehavior.com/neuroimaging/2010/05/converting-cortical-labels-from-freesurfer-to-volumetric-masks/
except since I'm interested in lobe m
btw, you should not need to run mri_annotation2label twice.
On 11/21/2013 10:44 AM, Mojdeh Zamyadi wrote:
> Hi all,
>
> I want to convert the cortical labels I get in freeSurfer to volumetric
> ROIs in the subject space and I've followed the steps mentioned in:
> http://brainybehavior.com/neuroimag
use mri_aparc2aseg instead of label2vol. This is how aparc+aseg.mgz is
created. Look in the recon-all.log file for the command line used.
doug
On 11/21/2013 10:44 AM, Mojdeh Zamyadi wrote:
> Hi all,
>
> I want to convert the cortical labels I get in freeSurfer to volumetric
> ROIs in the subj
