It looks like this worked, thank you very much for all of your time.
Jesse
On Sun, Nov 29, 2009 at 8:08 PM, Doug Greve wrote:
>
> Just run
>
> mri_convert dicom-from-series.dcm 001.mgz
>
> where "dicom-from-series.dcm" is a single file from the T1 series (it
> will find the rest).
>
> doug
>
>
>
Just run
mri_convert dicom-from-series.dcm 001.mgz
where "dicom-from-series.dcm" is a single file from the T1 series (it
will find the rest).
doug
On Sun, 29 Nov 2009, Jesse Bledsoe wrote:
> I have all of the dicoms - what is the best way to run mri_convert on all of
> the dicoms in the
I have all of the dicoms - what is the best way to run mri_convert on all of
the dicoms in the t1 directory?
Thank you,
Jesse
On Sun, Nov 29, 2009 at 5:29 PM, Douglas N Greve
wrote:
>
> Yes, though you may need to be careful about the orientation. I'm not sure
> if BRIKs have orientation info,
Yes, though you may need to be careful about the orientation. I'm not
sure if BRIKs have orientation info, but I'm sure that mri_convert does
not read it. If you can go back to the dicoms, that is best.
doug
Jesse Bledsoe wrote:
> I have T1volume+org.BRIK - should I use those with mri_convert
I have T1volume+org.BRIK - should I use those with mri_convert?
Thanks again,
Jesse
On Tue, Nov 24, 2009 at 4:23 PM, Saad, Ziad S. (NIH/NIMH) [E] <
sa...@mail.nih.gov> wrote:
> mri_convert usually work with BRIK files.
>
> Alternately, 3dAFNItoNIFTI could turn BRIK files to nifti format
> whi
These are not the standard .BRIK files? Ziad (ccd) will know.
Bruce
On Tue, 24 Nov 2009, Jesse Bledsoe wrote:
> Hello,
>
> So far I have had no problems running recon-all with .mnc files but could
> use some guidance converting/reconstructing brains processed with AFNI
> (MRDC).
>
> There are 1
Hello,
So far I have had no problems running recon-all with .mnc files but could
use some guidance converting/reconstructing brains processed with AFNI
(MRDC).
There are 120 MRDC files in the T1 directory.
I believe I need to run mri_convert on these MRDC files but am unsure of
what the correct
