Re: [Freesurfer] check talairach transform

2009-12-03 Thread Bruce Fischl
Hi Anne, 3 is best I think. Things rarely fail these days so you are better off just running them through and checking at the end. The orig surf is actually created twice - once by mri_tessellate then again by mris_fix_topology. cheers Bruce On Thu, 3 Dec 2009, Anne Gallagher wrote: > Hi, >

[Freesurfer] check talairach transform

2009-12-03 Thread Anne Gallagher
Hi, I run recon-all -autorecon1 on my own data set. I want to check the talairach transformation using tkregister2, but I don't have the "surf orig" (green lines) yet. My questions are: 1- How can I aligned the TARGET and MOVEABLE without the green lines? 2- Which of the 30 steps of recon-all -all