Hi Rob,
Trying setting the env variables like this if you are in dev env and
want the bhdr files.
setenv FSF_OUTPUT_FORMAT bhdr
Doug is replacing all the fsfast output formats to be in .nii
Balaji
Robert Levy wrote:
Hi Doug,
Thanks again. I think something must be wrong with stxgrinder t
Sorry, my mistake, I'm still a newbie to Freesurfer, and I was confused
about what files it was supposed to create.
The mris_preproc in /space/greve/... worked.
Thanks,
Rob
Doug Greve wrote:
There is a sig.nii there. Is that not what you want? Also, you should
use fsaverage as the target. we'r
There is a sig.nii there. Is that not what you want? Also, you should
use fsaverage as the target. we're trying to depricate average7
doug
Robert Levy wrote:
Hi Doug,
Thanks again. I think something must be wrong with stxgrinder though
as well, because no sig files were generated. Do you
Hi Doug,
Thanks again. I think something must be wrong with stxgrinder though as
well, because no sig files were generated. Do you know what might have
gone wrong there (I included the output of mkcontrast/stxgrinder in the
previous email just in case you need to see that in order trace the
ok, this should be fixed too at the next dev update. Or you can use the
version in:
/space/greve/1/users/greve/freesurfer/bin/mris_preproc
This version will not be stable long-term, so only use it until dev gets
updated.
doug
Robert Levy wrote:
Hello,
Thanks for the solution to the mkco
Hello,
Thanks for the solution to the mkcontrast-sess problem.
I thought that re-running stxgrinder would solve another problem I'm
having, trying to run mris_preproc, but it didn't seem to be the
answer. However I still think it is because something is amiss with
mk-contrast/stxgrinder tha
