Re: [Freesurfer] brain.mgz image error

2014-03-20 Thread Bruce Fischl
Hi Saurabh those are eye sockets not brain. If the surfaces don't include them then don't worry about them. cheers Bruce On Thu, 20 Mar 2014, Saurabh Thakur wrote: > Hello Freesurfer expert , > > I am sending you the image of brain.mgz screen-shot. > > Is the area highlighted is part of corte

Re: [Freesurfer] brain.mgz image error

2014-03-20 Thread markus . gschwind
Hi, Can you send us a screenshot of the original MRI before skull stripping? Thanks! Markus On 20 mars 2014, at 14:46, Saurabh Thakur wrote: > Hello Freesurfer expert , > > I am sending you the image of brain.mgz screen-shot. > > Is the area highlighted is part of cortex or it is due to skul