Re: [Freesurfer] brain parenchymal fraction

2018-07-26 Thread Barletta, Valeria
3:58 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] brain parenchymal fraction you'll have to be more specific about what "brain surface contour" means. On 7/26/18 3:46 PM, Barletta, Valeria wrote: > Dear Freesurfers, > I need to extract the brain parenchy

Re: [Freesurfer] brain parenchymal fraction

2018-07-26 Thread Douglas Greve
you'll have to be more specific about what "brain surface contour" means. On 7/26/18 3:46 PM, Barletta, Valeria wrote: > Dear Freesurfers, > I need to extract the brain parenchymal fraction to check brain atrophy in my > patients. > The BPF is defined as "the ratio of brain parenchymal tissue vol

[Freesurfer] brain parenchymal fraction

2018-07-26 Thread Barletta, Valeria
Dear Freesurfers, I need to extract the brain parenchymal fraction to check brain atrophy in my patients. The BPF is defined as "the ratio of brain parenchymal tissue volume to the total volume contained within the brain surface contour". In the text file aseg.stats, I found this info: # Measur

Re: [Freesurfer] brain parenchymal fraction calculation

2013-05-21 Thread Douglas N Greve
It excludes WM in cerebellum and brain stem. doug On 05/21/2013 10:31 AM, Ritobrato Datta wrote: > Hi All, > > I am using freesurfer 5.1 and I want to compute the brain parenchymal > fraction (GM+WM/GM+WM+ventricularCSF). > > In aseg.stats, I get the whole GM vol and I can also get the total > ve

[Freesurfer] brain parenchymal fraction calculation

2013-05-21 Thread Ritobrato Datta
Hi All, I am using freesurfer 5.1 and I want to compute the brain parenchymal fraction (GM+WM/GM+WM+ventricularCSF). In aseg.stats, I get the whole GM vol and I can also get the total ventricular CSF by adding the vols of different ventricles. But I am confused abt the terminology - Cortical