Re: [Freesurfer] big difference between ICV same patient....

2020-09-15 Thread Douglas N. Greve
nt distortion from the scan ("dewarping"). if you did that for one time point and not the other, then you could get a big diff in ICV   Sincerely, Gonzalo Rojas Costa >Message: 6 >Date: Thu, 10 Sep 2020 12:42:41 -0400 >From: "Douglas N. Greve" <mailto:dgr...@

Re: [Freesurfer] big difference between ICV same patient....

2020-09-11 Thread Gonzalo Rojas Costa
reprocess ? Other question... what do you mean with " You might be comparing dewarped vs not dewarped" Sincerely, Gonzalo Rojas Costa >Message: 6 >Date: Thu, 10 Sep 2020 12:42:41 -0400 >From: "Douglas N. Greve" >Subject: Re: [Freesurfer] big difference betwe

Re: [Freesurfer] big difference between ICV same patient....

2020-09-10 Thread Douglas N. Greve
It all comes down to the registration. See https://surfer.nmr.mgh.harvard.edu/fswiki/eTIV The image may have more-or-less neck and that can change the registration and ICV. The contrast may be different. The scanner may have had software updates. You might be comparing dewarped vs not dewarped.

[Freesurfer] big difference between ICV same patient....

2020-09-10 Thread Gonzalo Rojas Costa
External Email - Use Caution Hi: Why I got a big ICV difference between MPRAGE of the same patient (2019: 1775887.317631, 2020: 1566398.53576 mm3), one-year difference acquisition, and the same MRI Skyra 3T equipment? I used freesurfer 5.1.0 on the same computer, and operating s