Re: [Freesurfer] bbregister and AFNI

2014-01-31 Thread Douglas N Greve
On 01/30/2014 06:34 PM, Ajay Kurani wrote: > Hi all, >I used freesurfer to process my anatomical scans, followed by > BBregister to align my resting state scan to the anatomical and > finally afni to process the resting state fmri scans. After recon-all > I used bbregister: > * > * > *bbre

[Freesurfer] bbregister and AFNI

2014-01-30 Thread Ajay Kurani
Hi all, I used freesurfer to process my anatomical scans, followed by BBregister to align my resting state scan to the anatomical and finally afni to process the resting state fmri scans. After recon-all I used bbregister: *bbregister -s ${sub}_FS --mov ${sub}.RS.nii --reg $sub_RS_register.dat