Re: [Freesurfer] bbregister- switched coronal and axial views error

2019-06-21 Thread Greve, Douglas N.,Ph.D.
What version of FS are you using? If before 6.0 (eg, 5,3), then it may be an error with the initialization. This is much improved in version 6. On 6/18/2019 5:38 PM, Wenzhen Zhao wrote: > External Email - Use Caution > > Dear list, > > After running preproc-sess on fmri data, bbr-sum was

[Freesurfer] bbregister- switched coronal and axial views error

2019-06-18 Thread Wenzhen Zhao
External Email - Use Caution Dear list, After running preproc-sess on fmri data, bbr-sum was 0.94. After looking through images of template.nii.gz with register.dof6.lta file, I found that coronal and axial views of template(w/ registration applied) are switched. $preproc-sess