Re: [Freesurfer] bblabel

2014-08-07 Thread Agoston Mihalik
...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve Sent: 07 August 2014 16:41 To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] bblabel You have to be in the folder where mri_mergelabels is located to run the tcsh command. Can you look at the first

Re: [Freesurfer] bblabel

2014-08-07 Thread Douglas N Greve
>> From: freesurfer-boun...@nmr.mgh.harvard.edu >> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N >> Greve >> Sent: 06 August 2014 23:27 >> To: freesurfer@nmr.mgh.harvard.edu >> Subject: Re: [Freesurfer] bblabel >> >> >>

Re: [Freesurfer] bblabel

2014-08-07 Thread Agoston Mihalik
ption: `- Usage: tcsh [ -bcdefilmnqstvVxX ] [ argument ... ]. -Original Message- From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve Sent: 07 August 2014 16:07 To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer

Re: [Freesurfer] bblabel

2014-08-07 Thread Douglas N Greve
:27 > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] bblabel > > > You are correct. The problem is actually that the echo commands sees the > question marks and interprets them as wildcards (like *) for file names, but > it cannot find such files and it it d

Re: [Freesurfer] bblabel

2014-08-07 Thread Agoston Mihalik
From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve Sent: 06 August 2014 23:27 To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] bblabel You are correct. The problem is actually that the echo commands sees the question

Re: [Freesurfer] bblabel

2014-08-06 Thread Douglas N Greve
eesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve Sent: 05 August 2014 23:01 To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] bblabel Can you send the full terminal output? Are you sure that there is something in the .label fi

Re: [Freesurfer] bblabel

2014-08-06 Thread Agoston Mihalik
N Greve Sent: 05 August 2014 23:01 To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] bblabel Can you send the full terminal output? Are you sure that there is something in the .label file? On 08/05/2014 08:47 AM, Agoston Mihalik wrote: > > Dear All > > I have problems usi

Re: [Freesurfer] bblabel

2014-08-05 Thread Douglas N Greve
Can you send the full terminal output? Are you sure that there is something in the .label file? On 08/05/2014 08:47 AM, Agoston Mihalik wrote: > > Dear All > > I have problems using bblabel and would like to ask for expertise. > > At first, I tried to make a coronal cut in the following way: > >

[Freesurfer] bblabel

2014-08-05 Thread Agoston Mihalik
Dear All I have problems using bblabel and would like to ask for expertise. At first, I tried to make a coronal cut in the following way: 'bblabel --l lh.DLPFCsd.label --o lh.out.label --ymin 26' I got a runtime error with: 'echo: No match' Then I used the example in bblabel help: 'bblabel --l

Re: [Freesurfer] bblabel values for DLPFC

2013-04-11 Thread Anupa AV
2 AM Subject: Re: [Freesurfer] bblabel values for DLPFC I don't know that there is such a definition of DLPFC. doug On 04/09/2013 04:52 AM, Anupa AV wrote: > Dear All, > > I 'd like to know the xmin, ymin and zmin for creating DLPFC label > using bblabel string. >

Re: [Freesurfer] bblabel values for DLPFC

2013-04-09 Thread Douglas N Greve
I don't know that there is such a definition of DLPFC. doug On 04/09/2013 04:52 AM, Anupa AV wrote: > Dear All, > > I 'd like to know the xmin, ymin and zmin for creating DLPFC label > using bblabel string. > I want to make a coronal cut at y=26 for seperating DLPFC from > premotor cortex. > >

[Freesurfer] bblabel values for DLPFC

2013-04-09 Thread Anupa AV
Dear All, I 'd like to know the xmin, ymin and zmin for creating DLPFC label using bblabel string. I want to make a coronal cut at y=26 for seperating DLPFC from premotor cortex. I tried by giving a value of xmin=0, ymin=26 and zmin= 0. I'd like to know whether I'm on right track. Thanks in adv