Sarah,
You can use the -motioncor option of recon-all to perform the averaging.
Refer to:
http://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable
Notice this assumes that the input files are already in the
/mri/orig directory. To do this, given two structural dicoms:
recon-all -s \
-
Hi all,
I have a question about averaging scans. We are trying to average 2
scans taken one after another on the same person to run them through
FreeSurfer, but are not sure of the command to do this. Does anyone
know of the command, and at what point in processing to use it?
Thanks!
sarah
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