Re: [Freesurfer] average/RB_all_2008-03-26.gca not found error

2013-07-09 Thread Salil Soman
Thank you for your email. Yes that v is what freesurfer home is set to. Somehow that GCA file (SMS numerous others) were missing from the averages folder. I manually chopped them from a different 5.3 install, but am not sure v why they are missing (I am the only person using this machine and did no

Re: [Freesurfer] average/RB_all_2008-03-26.gca not found error

2013-07-09 Thread Bruce Fischl
Hi Salil what is FREESURFER_HOME set to? Is it /usr/local/freesurfer? Does /usr/local/freesurfer/average/RB_all_2008-03-26.gca exist? cheers Bruce On Mon, 8 Jul 2013, Salil Soman wrote: Hi, Am running this command: $FREESURFER_HOME/bin/recon-all -i 3DSPGR.nii.gz -s WCA_248_T1Q_FS -nuint

[Freesurfer] average/RB_all_2008-03-26.gca not found error

2013-07-08 Thread Salil Soman
Hi, *Am running this command:* $FREESURFER_HOME/bin/recon-all -i 3DSPGR.nii.gz -s WCA_248_T1Q_FS -nuintensitycor-3T -nocanorm -openmp 50 -hippo-subfields -use-cuda -all *And am get this out put / error:* Testing for CUDA device: nvcc: NVIDIA (R) Cuda compiler driver Copyright (c) 2005-2012 NVID