Re: [Freesurfer] autorecon2 vs autorecon2-cp

2015-10-24 Thread Bruce Fischl
Hi Kasper yes, I think that is correct Bruce On Sat, 24 Oct 2015, Kasper Jessen wrote: Dear freesurfer group I have edited my subjects with both control points and brainmask edits. For the re-processing both my CPs and brainmask edits, at the same time i used the following command: * r

[Freesurfer] autorecon2 vs autorecon2-cp

2015-10-24 Thread Kasper Jessen
Dear freesurfer group I have edited my subjects with both control points and brainmask edits. For the re-processing both my CPs and brainmask edits, at the same time i used the following command: - recon-all -base Subject_base -tp Tp1 -tp Tp2 -autorecon2 -autorecon3 -3T Is this a correc