Re: [Freesurfer] autorecon2-cp error

2013-04-19 Thread Bruce Fischl
I mean if you look at the lh.orig.nofix (or the lh.orig since the topology fixing didn't finish) do you see the two hemis attached? Are there large chunks of skull included in the surface? Is the cerebellum attached? Whatever is wrong is not subtle On Fri, 19 Apr 2013, Claudia Dacquino wrote:

Re: [Freesurfer] autorecon2-cp error

2013-04-19 Thread Claudia Dacquino
Hi Bruce, I did check, the only problem that I could see is that in some slides ctrl pts are out of wm. What you mean with something dramatically wrong? Cheers, Claudia 2013/4/18 Bruce Fischl > Hi Claudia > > that defect is bigger than more cortical surfaces so something is > dramatically wrong

Re: [Freesurfer] autorecon2-cp error

2013-04-18 Thread Bruce Fischl
Hi Claudia that defect is bigger than more cortical surfaces so something is dramatically wrong. Did you check any of the outputs (wm.mgz, filled.mgz, lh.orig, etc...)? cheers Bruce On Thu, 18 Apr 2013, Claudia Dacquino wrote: Hi freesurfer,  my autorecon2-cp after ctrl pts edits exited wit

[Freesurfer] autorecon2-cp error

2013-04-18 Thread Claudia Dacquino
Hi freesurfer, my autorecon2-cp after ctrl pts edits exited with this error message: CORRECTING DEFECT 0 (vertices=176788, convex hull=8149) Excessive topologic defect encountered: could not allocate -776253752 edges for retessellation Cannot allocate memory Could anyone help me with this, please