Re: [Freesurfer] autmatic image with panel of hemisphere made by script

Hi Thanks. Python was the first programing languages that I learned along with Java. Cheers Knut Jørgen On 08. feb. 2012 06:42, Michael Waskom wrote: Hi, On the off chance that you are comfortable with Python, you may find that PySurfer provides a more pleasant

Re: [Freesurfer] autmatic image with panel of hemisphere made by script

Hi, On the off chance that you are comfortable with Python, you may find that PySurfer provides a more pleasant scripting environment than the tcl-based TkSurfer interface :) Best, Michael On Tue, Feb 7, 2012 at 12:46 PM, Douglas N Greve wrote: > Hi Knut, you can c

Re: [Freesurfer] autmatic image with panel of hemisphere made by script

Hi Knut, you can check out my script called tksnap (uses accopanying mytks.tcl). It will take pics in different orientations. Note: this is not a supported script, so it's up to you to figure out what it does and how it does it. I provide it as a way to help you figure this stuff out. If you do

Re: [Freesurfer] autmatic image with panel of hemisphere made by script

you could create each of the individual maps, but not the placement and not the tet On Tue, 7 Feb 2012, Knut J Bjuland wrote: > Hi Bruce > > > Is it possible to use ascript to create a similar figure to the jpg file I am > attaching? > > Knut J > > > > On 07. feb. 2012 15:09, Bruce Fischl wrote:

Re: [Freesurfer] autmatic image with panel of hemisphere made by script

Hi Knut you can use a tcl script in tksurfer if you want. You are probably better off doing the 10^-log(p) on your own and saving it as a separate overlay. There are plenty of tcl scripts in the distribution as examples. A simple one would be: set val $home/$subject/label/$hemi.your_overlay.m

[Freesurfer] autmatic image with panel of hemisphere made by script

I have used Tksurfer to make image from cross subject statistics maps in mgh files. Is it possible to use a script to make image with both hemisphere in lateral and medial view. I would also like to display p values as 10^-log(p). Is this possible? Can I use Matlat or FDR? How can I produce im