ter into lobes?!
>
> -Original Message-
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N
> Greve
> Sent: Friday, June 27, 2014 2:25 PM
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Frees
bes?!
>
> -Original Message-
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve
> Sent: Friday, June 27, 2014 2:25 PM
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] aparc+aseg OR
: [Freesurfer] aparc+aseg OR wmparc
what do you mean? Do you want to have it labelled as something instead of being
"unsegmented"? wmparc is a gyral segmentation of WM, so away from a gyrus it
does not have much meaning. We semi-arbitrarily set the threshold to be 5mm.
But you can set the
gt; -Original Message-
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve
> Sent: Thursday, June 26, 2014 5:43 PM
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] aparc+aseg OR wmparc
&
] On Behalf Of Douglas N Greve
Sent: Thursday, June 26, 2014 5:43 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] aparc+aseg OR wmparc
Sorry, I think I misunderstood your first question. What do you mean you want
to exclude the unsegmented WM?
doug
On 06/26/2014 05:27 PM
edu] On Behalf Of Douglas N Greve
> Sent: Thursday, June 26, 2014 5:03 PM
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] aparc+aseg OR wmparc
>
> yes
> On 06/26/2014 04:49 PM, Alshikho, Mohamad J. wrote:
>> Hi Fs Experts,
>>
>> I am wor
: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve
Sent: Thursday, June 26, 2014 5:03 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] aparc+aseg OR wmparc
yes
On 06/26/2014 04:49 PM, Alshikho, Mohamad J. wrote:
>
>
yes
On 06/26/2014 04:49 PM, Alshikho, Mohamad J. wrote:
>
> Hi Fs Experts,
>
> I am working on FA ROI analysis for my subjects, I did the following:
>
> 1.Mri_vol2vol –mov fa.nii –reg register.dat –fstarg –interp nearest –o
> fa.anat.mgh
>
> 2.Mri_segstat wmparc.mgz --ctab
> $FREESURFER_HOME/Free
Hi Fs Experts,
I am working on FA ROI analysis for my subjects, I did the following:
1. Mri_vol2vol -mov fa.nii -reg register.dat -fstarg -interp nearest -o
fa.anat.mgh
2. Mri_segstat wmparc.mgz --ctab $FREESURFER_HOME/FreeSurferColorLUT.txt
-I fa.anat.mgh -sum fa.stats
Then I used
