Re: [Freesurfer] anatorig vs anat in dlabel

2014-08-25 Thread Anastasia Yendiki
Hi Kirstie - That's correct. The only difference between the anatorig and anat is in the orientation, where the latter is always in LAS so it looks straight if you open it in fslview. For the purposes of freeview and every other freesurfer program, the two are indistinguishable, and they should

[Freesurfer] anatorig vs anat in dlabel

2014-08-22 Thread Kirstie Whitaker
Hi I have a very minor question about the naming scheme for tracula output. I have the folders anat and anatorig in the dlabel folder. Am I right that: anatorig is the T1 image in "freesurfer space" (256 x 256 x 256; LIA) anat is a rotated version of the T1 image in freesurfer space that lines up