Re: [Freesurfer] about the Gray matter volume

2007-05-01 Thread Bruce Fischl
yes, that will work. It will be a bit conservative (that is, if the overall brain is shrinking then you will underestimate the true effects) On Wed, 2 May 2007, hankee wrote: hi, Now I use the parahippocampal gyrus gray matter volume to divide the total gray matter volume,after that I use the

Re: [Freesurfer] about the Gray matter volume

2007-05-01 Thread rahul
Hi Hankee, For the parahippocampal gyrus, I would do the following to correct for head size: Raw Parahippocampal volume (as derived from aparc.stats)/ICV (as derived from aseg.stats) Best, rahul > hi, > Now I use the parahippocampal gyrus gray matter volume to divide the total > gray matter vo

[Freesurfer] about the Gray matter volume

2007-05-01 Thread hankee
hi, Now I use the parahippocampal gyrus gray matter volume to divide the total gray matter volume,after that I use the ratio to do the statistics. I think though this procedure can adjust the head size for individual subjects. Am I riht? or I can do like this way? Bests hankee [EMAIL PROTEC

RE: [Freesurfer] about the Gray matter volume

2007-04-29 Thread Jenni Pacheco
: [Freesurfer] about the Gray matter volume I can't see the total gray matter volume in the ?h.aparc.stats file.If I run the mris_volume ?h.surface command in the /surf directory, It will produce the new file in this directory? which data will include in this file? After that I us

RE: [Freesurfer] about the Gray matter volume

2007-04-29 Thread Jenni Pacheco
)RE: [Freesurfer] about the Gray matter volume But I only can see the the total white matter volume in the ?h.aparc.stats file,don't have total gray matter volume it the this file. Thank you! hankee hankeeļ¼Œ <mailto:[EMAIL PROTECTED]> [EMAIL PROTECTED] 2007-04-29 ---

RE: [Freesurfer] about the Gray matter volume

2007-04-29 Thread Jenni Pacheco
This is reported in the ?h.aparc.stats file that is generated when the parcellation is run. Jenni _ From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of hankee Sent: Sunday, April 29, 2007 8:43 AM To: freesurfer Subject: [Freesurfer] about the Gray matter volume How to

[Freesurfer] about the Gray matter volume

2007-04-29 Thread hankee
How to calculate the total gray matter volume of the brain using FreeSurfer software ? [EMAIL PROTECTED] 2007-04-29 ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer