Re: [Freesurfer] Which boost version is used in CVS, mris_resample

2013-12-03 Thread Martin Kavec
Hi Andre, fantastic advice! You made my day! I followed instructions and so far so good, cvs is running. Thanks a lot, Martin On Tue, Dec 3, 2013 at 12:09 AM, André Ribeiro wrote: > Hi Martin, > > In November 27 I posted a similar question, which later I found a > solution. See if it works f

Re: [Freesurfer] Which boost version is used in CVS, mris_resample

2013-12-03 Thread Z K
Thank you Andre for this information. -Zeke On 12/02/2013 06:12 PM, André Ribeiro wrote: > Hi Martin, > > In November 27 I posted a similar question, which later I found a > solution. See if it works for you. > > Hi Lilla, > Thank you for your reply. I have boost installed, yet it is not

Re: [Freesurfer] Which boost version is used in CVS, mris_resample

2013-12-02 Thread André Ribeiro
Hi Martin, In November 27 I posted a similar question, which later I found a solution. See if it works for you. Hi Lilla, > Thank you for your reply. I have boost installed, yet it is not the > version required (v. 1.49). Although, even after installing an older > version such as the 1.41 it is n

Re: [Freesurfer] Which boost version is used in CVS, mris_resample

2013-12-02 Thread Martin Kavec
Hi Zeke, Thanks a lot for explanation. I think I will install centOS into a virtual machine for quick solution. I only need it to run CVS. Thanks and best regards, Martin Sent from my iPad > On 2.12.2013, at 22:50, Z K wrote: > > Martin, > > Upx (http://upx.sourceforge.net) is an executabl

Re: [Freesurfer] Which boost version is used in CVS, mris_resample

2013-12-02 Thread Z K
Martin, Upx (http://upx.sourceforge.net) is an executable packaging utility we run on all our binaries before shipping to reduce their overall size. One consequence of upx is that it changes the way the "file" and "ld" commands process the binaries. In this case it makes the "file" command say

Re: [Freesurfer] Which boost version is used in CVS, mris_resample

2013-12-02 Thread Martin Kavec
Hi Zeke, Thanks for response. Well it was the first thing for me to try to compile boost on gentoo, which went fine. However the libraries were not compatible. Gentoo has 1.52 version, while the one needed is about 4 years old. When I do "ldd mris_resample" I get "not a dynamic executable" and

Re: [Freesurfer] Which boost version is used in CVS, mris_resample

2013-12-02 Thread Z K
Martin, libboost is not a static library, it is a shared library. It comes by default on centOS platforms and freesurfer compiles against it during the the build process. Typing 'ldd mris_resample' and examining the output confirms this: $>ldd mris_resample linux-vdso.so.1 => (0x7fffd2773

Re: [Freesurfer] Which boost version is used in CVS, mris_resample

2013-11-28 Thread Martin Kavec
Hi Lilla, thanks for coming back. Unfortunately I was not able to compile appropriate boost for my operating system Gentoo linux. Nevertheless I do not understand why mris_resample misses the library if it should be statically linked. Other binaries do not need it. Could you please check if mris_r

Re: [Freesurfer] Which boost version is used in CVS, mris_resample

2013-11-25 Thread Lilla Zollei
This is a bit delayed response (my apologies) to an earlier question to the list: The boost library is installed by default on CentOS platforms. If a user gets the libboost error then they are using a different platform which doesn't have boost installed by default. On RedHat systems libboost

[Freesurfer] Which boost version is used in CVS, mris_resample

2013-11-04 Thread Martin Kavec
Hi guys, When running mri_cvs_register on linux (5.3.0), I get into problem with mris_resample, which cannot find libboost_programs_options.so.5. I installed the latest version of boost-1.52.0 for my system, but there are unresolved symbols. Which version is suitable for mris_resample? Thanks