.edu
on behalf of Bruce Fischl
Sent: Tuesday, May 5, 2015 4:08 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] What to do about excessive topologic defect
Hi Jessica
something has gone terribly wrong with the segmentation. What is the
input image you used? What does the wm.mgz look l
__
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Bruce Fischl
Sent: Tuesday, May 5, 2015 4:08 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] What to do about excessive topologic defect
Hi Jessica
something has gone terribly wrong with the segmentation. What is the
i
Hi Jessica
something has gone terribly wrong with the segmentation. What is the
input image you used? What does the wm.mgz look like over the brain.mgz?
cheers
Bruce
On
Tue, 5 May 2015, Jessica Lynn Hanson wrote:
Hi Freesurfers,
I've performed recon-all -all on a subject and found that
Hi Freesurfers,
I've performed recon-all -all on a subject and found that some of the cortex is
missing. I ran "recon-all -skullstrip -wsthresh 30 -clean-bm -no-wsgcaatlas -s
sub296.fs" and the cortex appeared, so I added control points in hopes of FS
recognizing the cortex, but I got the fol
