Re: [Freesurfer] Welch's t-test for HOV violation

2019-03-15 Thread Greve, Douglas N.,Ph.D.
an extracting the means be done at the whole-brain level? If we get the means and variances for each group, I'm assuming we would need to use ROIs. Could you please clarify whether it's possible to extract means across the whole brain? Thank you, Hannah Re: [Freesurfer] We

Re: [Freesurfer] Welch's t-test for HOV violation

2019-03-15 Thread Hannah CK
variances for each group, I'm > assuming we would need to use ROIs. Could you please clarify whether it's > possible to extract means across the whole brain? > > Thank you, > Hannah > > > > ___ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduh

Re: [Freesurfer] Welch's t-test for HOV violation

2019-03-14 Thread Greve, Douglas N.,Ph.D.
ase clarify > whether it's possible to extract means across the whole brain? Thank > you, Hannah ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > Re

Re: [Freesurfer] Welch's t-test for HOV violation

2019-03-14 Thread Hannah CK
means and variances for each group, I'm assuming we would need to use ROIs. Could you please clarify whether it's possible to extract means across the whole brain? Thank you, Hannah Re: [Freesurfer] Welch's t-test for HOV violation 2019-03-13 Thread Greve, Douglas N.,Ph.D. Hi H

Re: [Freesurfer] Welch's t-test for HOV violation

2019-03-13 Thread Greve, Douglas N.,Ph.D.
Hi Hannah, please include the previous correspondence so that we have context. Also, please remember to post to the list and not to us personally. thanks! doug On 3/13/19 10:52 PM, Hannah CK wrote: External Email - Use Caution Hi Dr. Greve, Thank you for this response. Can extracting

Re: [Freesurfer] Welch's t-test for HOV violation

2019-03-11 Thread Greve, Douglas N.,Ph.D.
I used to have this about 20 years ago, but I stopped supporting it when it did not fit cleanly into the GLM ... The shortest route is probably to do two separate analyses with mri_glmfit, one for each group. This will output means and variances for each group. Then use fscalc to compute maps o

[Freesurfer] Welch's t-test for HOV violation

2019-03-11 Thread Hannah CK
External Email - Use Caution We are conducting t-test comparisons across groups in which there is a large discrepancy in group sizes. HOV is violated. I've searched for ways to run Welch's t-test in FreeSurfer (or a similar analysis that does not assume homogeneity of variance) but