gt; [dgr...@mgh.harvard.edu]
> Sent: Tuesday, July 30, 2019 10:55 AM
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] WM surface including too much gray matter
>
> Hi Brian, I'm looking at your data. For the most part, it looks like the
> surface placement is
psychology Concentration
> Laboratory of Early Experience and Development (LEED)
> bdbiek...@uh.edu
> brian.biek...@times.uh.edu
>
>
> From: Brian Biekman
> Sent: Tuesday, July 30, 2019 12:51 PM
> To: Freesurfer support list
> Sub
__
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl
> [fis...@nmr.mgh.harvard.edu]
> Sent: Monday, July 29, 2019 9:29 AM
> To: Freesurfer support list
> Subject: Re: [Freesurfer] WM surface including too much gray
: [Freesurfer] WM surface including too much gray matter
Hi Brian, I'm looking at your data. For the most part, it looks like the
surface placement is accurate. I do find a few places where the white
surface "leaks" into the cortex like in the attached picture just to the
left of the curs
om: freesurfer-boun...@nmr.mgh.harvard.edu
> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl
> [fis...@nmr.mgh.harvard.edu]
> Sent: Monday, July 29, 2019 9:29 AM
> To: Freesurfer support list
> Subject: Re: [Freesurfer] WM surface including too much gray matter
>
> Hi
__
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl
> [fis...@nmr.mgh.harvard.edu]
> Sent: Monday, July 29, 2019 9:29 AM
> To: Freesurfer support list
> Subject: Re: [Freesurfer] WM surface including too much gr
29 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] WM surface including too much gray matter
Hi Brian
usually this is fixable by changing some default parameters in recon-all.
You can try this yourself (the intensity bounds used in mri_segment and
mris_make_surfaces - look at the help), o
Hi Brian
usually this is fixable by changing some default parameters in recon-all.
You can try this yourself (the intensity bounds used in mri_segment and
mris_make_surfaces - look at the help), or you can upload a subject
to our ftp site and we can recommend some
cheers
Bruce
On Su
External Email - Use Caution
To whom it may concern:
I'm dealing with an issue in my subjects' recon-all output where the white
matter surface extends into the gray matter, especially in the parietal and
posterior temporal regions. This is caused by the wm.mgz including too
