Re: [Freesurfer] WM segmentation question

2014-02-26 Thread Bruce Fischl
Hi Matt if they are outside of the pial surface at the end of recon-all then you don't have to worry about them. cheers Bruce On Wed, 26 Feb 2014, Moore, Matthew wrote: Dear Freesurfer Experts,   I am assessing the quality of the initial skull strip for some subject data after running aut

[Freesurfer] WM segmentation question

2014-02-25 Thread Moore, Matthew
Dear Freesurfer Experts, I am assessing the quality of the initial skull strip for some subject data after running autorecon1. I notice that in some cases non-brain matter near the eyes appears to remain, as well as some dura matter at the posterior of the brain. If these voxels are left untouc