Re: [Freesurfer] WM and pial surfaces problem

2013-07-19 Thread Louis Nicholas Vinke
freesurfer@nmr.mgh.harvard.edu" Envoyé le : Jeudi 18 juillet 2013 15h31 Objet : Re: [Freesurfer] WM and pial surfaces problem Hi Laouchedi what are the intensities in the white matter in that region in the brain.mgz? If significantly below 110, try sprinkling a few control points there cheers Bruc

Re: [Freesurfer] WM and pial surfaces problem

2013-07-19 Thread LAOUCHEDI MAKHLOUF
Objet : Re: [Freesurfer] WM and pial surfaces problem Hi Laouchedi what are the intensities in the white matter in that region in the brain.mgz? If significantly below 110, try sprinkling a few control points there cheers BruceOn Thu, 18 Jul 2013, LAOUCHEDI MAKHLOUF wrote: > Hi >     i ru

Re: [Freesurfer] WM and pial surfaces problem

2013-07-18 Thread Bruce Fischl
Hi Laouchedi what are the intensities in the white matter in that region in the brain.mgz? If significantly below 110, try sprinkling a few control points there cheers BruceOn Thu, 18 Jul 2013, LAOUCHEDI MAKHLOUF wrote: Hi     i run recon-all on a subject and when checking the surfaces, i no

[Freesurfer] WM and pial surfaces problem

2013-07-18 Thread LAOUCHEDI MAKHLOUF
Hi     i run recon-all on a subject and when checking the surfaces, i noticed that a big part of the temporal part is badly segmented; this concerned WM as well as the grey matter. on the RecommendedReconstruction page, it is explained how to remove parts of non-pial structures considered as s