Sorry for the delay. You should just run recon-all on
$FSLDIR/data/standard/MNI152_T1_1mm.nii.gz
It will give you a wmparc.mgz which you can then use directly with the
FSL output
doug
On 05/26/2015 04:59 PM, Estephan J. Moana-Filho wrote:
> Sorry, I thought my original post would be somehow lin
Sorry, I thought my original post would be somehow linked to the second
one. Here it is:
Dear Freesurfer experts,
I would like to segment a WM skeleton I derived using FSL's TBSS into ROIs
based on white matter regions as derived in the wmparc.mgz file. I thought of
using the "fsaverage" subject
what is the question?
On 05/26/2015 12:55 PM, Estephan J. Moana-Filho wrote:
> Any suggestions? I've perused the freesurfer mailing list and couldn't
> find any advice specifically to this question.
>
> Estephan
> ___
> Freesurfer mailing list
> Freesurf
Any suggestions? I've perused the freesurfer mailing list and couldn't
find any advice specifically to this question.
Estephan
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The
Dear Freesurfer experts,
I would like to segment a WM skeleton I derived using FSL's TBSS into ROIs
based on white matter regions as derived in the wmparc.mgz file. I thought of
using the "fsaverage" subject, but it does not have the
wmparc.mgz file; thus I plan to use the CVS atlas (cvs_avg35_i
