Dear All,
Please advise. Some of the dural enclosure defects involve both wm and pia
surfaces (wm/pia extending to dura), so in those cases, correcting pia will
also touch the wm. Editing wm in wm.mgz and running recon-all
-autorecon2-wm -autorecon3 ameliorates but does not solve the wm defect
is
Hi Octavian
if you want to regenerate the pial surface you have to run autorecon3
also.
And I don't think you want to edit the wm.mgz for wm edits. Probably you
should edit brain.finalsurfs.mgz for both wm and pial. Can someone who has
done more recent recons than I have confirm this?
chee
Dear All,
A simple issue of precedence. In the recon-all pipeline, wm edits take
precedence to pial edits.
If there are both wm and pial defects, should one apply edits sequentially,
say on brainmask.mgz (first wm edits, rerun recon-all say recon-all
-autorecon2 -wm, then do pial edits, rerun reco
Hi Lena,
it's probably an incorrectly fixed topological defect. If you email me the
wm.mgz and the lh.orig surface I'll take a look.
cheers,
Bruce
On Sat, 12 Dec 2009, Lena Palaniyappan wrote:
Hi all
Please see the attached images slices 108 to 111
What is happening at precentral / midd
