Re: [Freesurfer] Visulaization of FreeSurfer-defined ROI

2011-11-04 Thread Jonca, Jacek
...@nmr.mgh.harvard.edu] On Behalf Of Jade Sent: Friday, November 04, 2011 4:22 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Visulaization of FreeSurfer-defined ROI Hello Freesurfer experts, I am a beginner in using Freesurfer. I want to make a figure illustrates a specific area of

Re: [Freesurfer] Visulaization of FreeSurfer-defined ROI

2011-11-04 Thread Douglas N Greve
Try running mri_binarize with the --match option. The match value should be the id number for your ROI as defined in $FREESURFER_HOME/FreeSurferColorLUT.txt (eg, left hippo is 17). You can then load this as a segmentation or as an overlay in tkmedit. doug Jade wrote: > Hello Freesurfer experts,

[Freesurfer] Visulaization of FreeSurfer-defined ROI

2011-11-04 Thread Jade
Hello Freesurfer experts, I am a beginner in using Freesurfer. I want to make a figure illustrates a specific area of ROIs (e.g., lh. hippocampus). How can I visulaize the Freesurfer definded ROIs? Thanks in advance! ___ Freesurfer mailing list Freesu