Try running mri_surf2surf like this (added rawavg.mgz after register.dat)
mri_surf2surf --sval-xyz pial --reg register.dat rawavg.mgz --tval
pial.native --tval-xyz --hemi lh --s 1158119_3_6
On 03/08/2013 12:38 PM, Timothy Brown wrote:
> Hi Doug,
>
> mri_vol2vol --mov brain.mgz --targ rawavg.mgz
Tim, what were your vol2vol, surf2surf, and freeview commandlines?
doug
On 03/08/2013 11:10 AM, Timothy Brown wrote:
> Hi Doug,
>
> Thank you for your reply.
>
> I tried FreeView and have attached screenshots of results.
>
> freeview_native_brain.jpg - snapshot of native brain
>
> freeview_aseg.jpg
Hi Tim, I don't think you can use tkmedit for this. tkmedit is a bit
rigid and expects things to be a certain way (ie, not in native space).
Try using freeview instead.
doug
On 03/07/2013 03:19 PM, Timothy Brown wrote:
> Dear FreeSurfer users,
>
> I wish to view volumes and surfaces in native sp
