Re: [Freesurfer] VBM by freesurfer

2018-12-18 Thread Maurizio Bergamino
External Email - Use Caution Thank you! Il giorno mar 18 dic 2018 alle ore 11:43 Bruce Fischl < fis...@nmr.mgh.harvard.edu> ha scritto: > Hi Maurizio > > the orig.mgz has been converted to 1 byte/pixel and 256^3 1mm isotropic. > You can use mri_convert to go back to your original

Re: [Freesurfer] VBM by freesurfer

2018-12-18 Thread Bruce Fischl
Hi Maurizio the orig.mgz has been converted to 1 byte/pixel and 256^3 1mm isotropic. You can use mri_convert to go back to your original data space via: mri_convert -rl orig/001.mgz cheers Bruce On Tue, 18 Dec 2018, Maurizio Bergamino wrote: External Email - Use CautionĀ 

[Freesurfer] VBM by freesurfer

2018-12-18 Thread Maurizio Bergamino
External Email - Use Caution Hello, I am trying to run a VBM analysis by using the white matter and the grey matter masks from Freesurfer, because, often, other tools are not able to calculate a correct white matter and grey matter masks. When I have these masks, I have to apply th