Re: [Freesurfer] Using the new Thalamus tool

2018-09-12 Thread Erik O'Hanlon
lf of Douglas N. Greve Sent: 11 September 2018 18:12:39 To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Using the new Thalamus tool And just to be clear, you should run only the thalamus, hippo, amyg, brainstem segmentations in dev. Do not run recon-all using the dev version. Erik O&#

Re: [Freesurfer] Using the new Thalamus tool

2018-09-11 Thread Douglas N. Greve
- > *From:* freesurfer-boun...@nmr.mgh.harvard.edu > on behalf of Iglesias > Gonzalez, Eugenio > *Sent:* 10 September 2018 18:00:20 > *To:* freesurfer@nmr.mgh.harvard.edu; Freesurfer support list > *Subject:* Re: [Freesurfer] Using the new Thalam

Re: [Freesurfer] Using the new Thalamus tool

2018-09-11 Thread Erik O'Hanlon
list; Freesurfer support list Subject: Re: [Freesurfer] Using the new Thalamus tool External Email - Use Caution 10-15 mins or so Sent from my phone, please excuse brevity and typos From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Erik O'Han

Re: [Freesurfer] Using the new Thalamus tool

2018-09-11 Thread Iglesias Gonzalez, Eugenio
pport list Subject: Re: [Freesurfer] Using the new Thalamus tool External Email - Use Caution Thanks Eugenio, I'll intall the latest dev version so. How long does it typically take to run a subject through the thalamus pipeline typically? Thanks again for the prompt reply.

Re: [Freesurfer] Using the new Thalamus tool

2018-09-11 Thread Erik O'Hanlon
Erik From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Iglesias Gonzalez, Eugenio Sent: 10 September 2018 18:00:20 To: freesurfer@nmr.mgh.harvard.edu; Freesurfer support list Subject: Re: [Freesurfer] Using the new Thalamus tool External Email - Use Caution Dear

Re: [Freesurfer] Using the new Thalamus tool

2018-09-10 Thread Iglesias Gonzalez, Eugenio
September 6, 2018 3:44:57 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Using the new Thalamus tool External Email - Use Caution Hi FS Experts I've run my data through the brainstem, hippocampus and amygdala following the usual Recon_all and using the develo

[Freesurfer] Using the new Thalamus tool

2018-09-06 Thread Erik O'Hanlon
External Email - Use Caution Hi FS Experts I've run my data through the brainstem, hippocampus and amygdala following the usual Recon_all and using the developmental version downloaded and stalled around Jan2018. I'd like to use the new thalamus tool and am wondering if I need