Hi Heather
I guess you could run autorecon1, then run BET if the results are not
satisfactors to replace the brainmask.mgz, then run autorecon2 and 3.
cheers
Bruce
On
Wed, 11 Jul 2012, Lugar, Heather wrote:
Hello,
We?re working with a pediatric data set and have found that Freesurfer?
Hello,
We're working with a pediatric data set and have found that Freesurfer's
skullstripping process is inadequate for our purposes. We're interested in
using FSL's bet, which we have found to do a better job of skullstripping, in
combination with the other steps of Freesurfer. In a previous
