Re: [Freesurfer] Using aseg to sample other image types

2011-01-06 Thread Douglas N Greve
Not directly. You can create a mask using mri_binarize of the range you want, then pass that as a mask to mri_segstats. doug Carl Anderson wrote: > Thanks Nick, > > I was able to extract T2 values! > However, I noticed that mri_segstats appears to only sample T2 values > from 0 to 300. > Woul

Re: [Freesurfer] Using aseg to sample other image types

2010-12-30 Thread Nick Schmansky
mri_segstats, for example: mri_segstats --seg aseg.mgz \ --ctab $FREESURFER_HOME/FreeSurferColorLUT.txt \ --i T1.mgz \ --sum T1.stats produces a text file 'T1.stats' which has stats on each aseg struct as taken from the vol T1.mgz. n. On Thu, 2010-12-30 at 17:52 -0500, Carl Anderson wrote: >