Merci bien :).
On Wed, Feb 18, 2015 at 2:54 PM, Anastasia Yendiki <
ayend...@nmr.mgh.harvard.edu> wrote:
>
> Hi Barbara Anne - Actually it's fine if you use the -r flag in fslstats,
> because that will give you a robust maximum (i.e., if there are a couple of
> voxels that are outliers with a ver
Hi Barbara Anne - Actually it's fine if you use the -r flag in fslstats,
because that will give you a robust maximum (i.e., if there are a couple
of voxels that are outliers with a very high value it won't take them into
account, which is probably a good idea here). Then use 20% of that robust
Thank you very much Anastasia,
May I please check with you if what I am thinking of doing sounds correct?
I would use fslstats in FSL with the flag -R which gives me the maximum
value. For Forceps major I get a value of 200, 20% of this value would be
40, so then in the path.pd.nii.gz image I thres
Hi Barbara Anne - In each tract's directory, you'll find the tract as a
volumetric probability distribution in the file path.pd.nii.gz. You can
use that as an ROI to extract statistics from any other volume that's in
the same space as the tracts (native DWI space). To be consistent with the
F
Dear TRACULA experts,
I wonder if you could please assist me in extracting tract values from an
image I transferred to diffusion space.
I ran TRACULA on my DTI dataset, however from other structural images I aim
to extract values for tracts as well.
I also extracted DTI derived measures from the
