[Freesurfer] Using T2 or FLAIR data to improve pial surfaces

2018-12-18 Thread Hengameh Marzbani
External Email - Use Caution Dear all I want to use T2 or FLAIR data to improve pial surfaces. I wonder, which one is better? using T2pial or FLAIRpial? Is there any difference in output? Thank you so much in advance for your time and help! Hengameh _

Re: [Freesurfer] Using T2 or Flair data to improve pial surfaces

2018-06-25 Thread Douglas Greve
: [Freesurfer] Using T2 or Flair data to improve pial surfaces Did you run recon-all with -qcache ? On 6/19/18 9:30 AM, Heidi Lindroth wrote: External Email - Use Caution Hi there, I have used T2/Flair images to improve the pial surface reconstruction, however, when I tried to

Re: [Freesurfer] Using T2 or Flair data to improve pial surfaces

2018-06-19 Thread Heidi Lindroth
, 2018 9:38:25 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Using T2 or Flair data to improve pial surfaces Did you run recon-all with -qcache ? On 6/19/18 9:30 AM, Heidi Lindroth wrote: External Email - Use Caution Hi there, I have used T2/Flair images to improve the

Re: [Freesurfer] Using T2 or Flair data to improve pial surfaces

2018-06-19 Thread Douglas Greve
Did you run recon-all with -qcache ? On 6/19/18 9:30 AM, Heidi Lindroth wrote: External Email - Use Caution Hi there, I have used T2/Flair images to improve the pial surface reconstruction, however, when I tried to analyze these data in QDEC, I was unable to load the files because

[Freesurfer] Using T2 or Flair data to improve pial surfaces

2018-06-19 Thread Heidi Lindroth
External Email - Use Caution Hi there, I have used T2/Flair images to improve the pial surface reconstruction, however, when I tried to analyze these data in QDEC, I was unable to load the files because the T1/T2 processed scans do not have the following file type: lh.thicknes