Re: [Freesurfer] Using ROIs in SPM

2015-07-28 Thread amirhossein manzouri
Hi Doug, I solved the problem by using: bbregister --s subject --mov func_denoised/vol.nii --bold --init-spm --reg register.dat mri_label2vol --label mask.label --reg register.dat --temp func_denoised/vol.nii --o mask.nii Best regards, Amirhossein Manzouri On Mon, Jul 27, 2015 at 7:

Re: [Freesurfer] Using ROIs in SPM

2015-07-27 Thread Douglas N Greve
What are the two T1 images? The command line below will take a label in 152 space and transfer it to mni305 space. I'm not sure what you are actually trying to achieve. doug On 07/23/2015 10:44 AM, amirhossein manzouri wrote: > Hi, > I found group differences based on T1 images with 8 channel co

[Freesurfer] Using ROIs in SPM

2015-07-23 Thread amirhossein manzouri
Hi, I found group differences based on T1 images with 8 channel coil in QDEC and for fMRI in SPM I have used T1 images from 32 channel coil for the same subjects . Now I want to use the regions that I found in QDEC for fMRI analysis . Would you please let me know how can I transfer the labels betwe