It sounds like you want to convert your label into a binary mask to use
with mri_fdr. Use mri_label2label, something like
mri_label2label --srclabel your.label --s subject --hemi lh --outmask
your.label.nii.gz
Run with --help to get more info
On 03/14/2018 10:41 PM, Chen Jen-I. wrote:
> This
This is surface-based analysis. I used tksurfer to load the mask.mgh as overlay
e.g.
tksurfer fsaverage rh inflated -fthresh 2.3 -overlay mask.mgh -delink -curv
-gray
The mask.mgh file is from the GLMFIT folder after I ran mri_glmfit on my
cortical thickness data within the areas set by the la
Is this a volume or surface-based analysis? How did you try to visualize it?
On 03/10/2018 12:56 AM, Chen Jen-I. wrote:
> Hello,
>
> I want to do a FDR correction using mri_fdr within a ROI mask (in .label
> format). I see the option of passing the sig.mgh volume through a mask, and I
> read th
Hello,
I want to do a FDR correction using mri_fdr within a ROI mask (in .label
format). I see the option of passing the sig.mgh volume through a mask, and I
read that one can use the mask.mgh in the GLMFIT folder. What is this mask.mgh?
I tried to visualize it in Freeview but it doesn’t look l
