Re: [Freesurfer] Understanding MNI305 alignment

2016-08-25 Thread Douglas N Greve
That is basically expected. I created a slightly liberal mask so as to not exclude any regions. Having said that, you should check the talairach.xfm transform of your subjects. Sometimes the scaling can be a little off. On 08/25/2016 04:40 PM, Christopher J Markiewicz wrote: > Hi all, > > This

[Freesurfer] Understanding MNI305 alignment

2016-08-25 Thread Christopher J Markiewicz
Hi all, This is the subcortical mask for a subject's functional data overlaid on top of $FREESURFER/average/mni305.cor.mgz: https://imgur.com/XQPwGVT The mask was produced with preproc-sess -s $SESS -fsd bold -nostc -per-session -fwhm 5 -mni305 Is the spread beyond the anatomical boundaries a