Re: [Freesurfer] Underestimated Pial surface - after deleting problematic voxels

2013-03-28 Thread preciado
mri_info for both attached. Interestingly enough, brain.finalsurfs.manedit.mgz is significantly larger in size. If it was a copy of the other, shouldn't it be the same size? Also, brain.finalsurfs.manedit.mgz shows a time/date stamp from the last time I edited it and brain.finalsurfs.mgz has a tim

Re: [Freesurfer] Underestimated Pial surface - after deleting problematic voxels

2013-03-28 Thread Bruce Fischl
well, something is really wrong. Did you happen to change the voxel type of brain.finalsurfs.mgz? Can you run mri_info on it and send us the results? If not, then upload the tarred and gzipped subject dir and I'll take a look. I don't think it will be hard to fix On Thu, 28 Mar 2013, preci...@n

Re: [Freesurfer] Underestimated Pial surface - after deleting problematic voxels

2013-03-28 Thread Bruce Fischl
eek, that's pretty bad. No idea why that would happen. Can you send us the recon-all.log? If you rerun with the original brain.finalsurfs.mgz does it restore good surfaces? On Thu, 28 Mar 2013, preci...@nmr.mgh.harvard.edu wrote: > Hello Freesurfers, > > I ran recon-all on a subject's structura