Re: [Freesurfer] Troubleshooting the preproc

2013-02-12 Thread Anastasia Yendiki
Hi Susie - avscale is part of the FSL package. You have to make sure FSL is installed and in your path. a.y On Wed, 6 Feb 2013, Susan Kuo wrote: Hi FreeSurfer community,   I am currently trying to troubleshoot my preprocessing part of TRACULA with the tutorial dataset (for Diff001 as the s

[Freesurfer] Troubleshooting the preproc

2013-02-06 Thread Susan Kuo
Hi FreeSurfer community, I am currently trying to troubleshoot my preprocessing part of TRACULA with the tutorial dataset (for *Diff001* as the subject, specifically), running *trac-all -corr -c *. I am running the commands in * subjectID/scripts/trac-all.cmd* one by one because I've had problem