Re: [Freesurfer] Troubleshooting - uncertainty about adding control points

2014-01-31 Thread Bruce Fischl
Hi Janosch there should be some corrected subjects in the tutorial. The white matter surface shouldn follow the perceived boundary, although it may look wrong when it is when it is curving sharply out of plane. I don't have much experience with MDEFT, so I can't comment on the parameters che

Re: [Freesurfer] Troubleshooting - uncertainty about adding control points

2014-01-31 Thread Janosch Linkersdörfer
Hi Bruce, thanks for your answer! Am 30.01.2014 um 14:40 schrieb Bruce Fischl : > Hi Janosch > > it's impossible to tell from a single slice whether those points should be > added or not. The white matter in your image is *very* dark in these regions, > do you know why? No, I don't know why,

Re: [Freesurfer] Troubleshooting - uncertainty about adding control points

2014-01-30 Thread Bruce Fischl
Hi Janosch it's impossible to tell from a single slice whether those points should be added or not. The white matter in your image is *very* dark in these regions, do you know why? To decide whether to add them or not you should check a couple of slices in each direction (or look in multiple