Todd, have you looked at our documentation on coordinate systems?
http://www.freesurfer.net/fswiki/CoordinateSystems?action=AttachFile&do=get&target=fscoordinates.pdf
This gives the relationship between the FS and FSL coords
doug
Todd Krieg wrote:
> I am trying to use the output meshes from freesu
I am trying to use the output meshes from freesurfer (lh/rh.pial and
lh/rh.white converted to .stl) with the BET meshes from FSL. They seem to
be in different coordinate systems and have to be moved and scaled to match
correctly. Is there an easy transform that can do this. I have tried
several
