Hi Martijn - You could check how the ILF of the atlas subjects aligns with
your subject's anatomical segmentation. These files are all in MNI space
here:
dlabel/mni/aparc+aseg.nii.gz
dlabel/mni/aparc+aseg_mask.nii.gz (dilated version used as a brain mask)
dlabel/mni/lh.ilf_*_histo.nii.gz
No
Thanks for your reply, sorry for the delay. The problems appear in the left
hemisphere ILF_AS. The subject has atrophy and a number of periventricular
lesions.
Does the error indicate that set of the endpoints could not be mached? In
that case it could be that the points in the temporal pole give
Hi Martijn,
Which pathway does it fail on? Is the pathology of your subject affecting
the structures in the aparc+aseg that surround that pathway?
a.y
> Dear all,
>
> I'm running Tracula on a brain with some pathology. During the preproc
> phase it fails with the following error:
>
> INFO: Rejec
Dear all,
I'm running Tracula on a brain with some pathology. During the preproc
phase it fails with the following error:
INFO: Rejected 843 streamlines for straying off mask
INFO: Rejected 0 streamlines for reversing direction
INFO: Rejected 10 streamlines as length outliers
INFO: Have 2748 tota
