Hi Tadeu - The files appear to have the problem described here:
https://www.mail-archive.com/freesurfer%40nmr.mgh.harvard.edu/msg20513.html
That's probably was causing them not to be converted correctly.
a.y
On Thu, 6 Nov 2014, Tadeu Kubo wrote:
Dear FS Experts,
I'm trying to work with the
Dear FS Experts,
I'm trying to work with the DTI Siemens (non MGH) and is not working. An error
occurs in step "Tensor Fit”.
II tried a solution that have worked as substitute bvecs values before this
step manual (by original bvecs) and it works great (is meant by: continued)!.
Surely I'm doi
Hi Francesco - The bvecs file that you're attaching has only 3 vectors,
while the bvals file has 65 b-values. Are these your original files, or
the ones saved by trac-all in the dmri/ directory?
a.y
On Mon, 13 Jan 2014, Francesco Baldacchini wrote:
> Hi everybody,
> I'm trying to run the trac
Hi everybody,
I'm trying to run the* trac all -prep *command but after some times I get
this error "bvecs and bvals don't have the same number of entries". I've
checked my bvals and bvecs, which are in attach, but they seems to be
formatted in the right way. What can I do? Thanks,
Francesco Balda
In the files that you sent me earlier, the final bvecs had a set of 10
all-zero directions in the end (which I thought may have been caused by
the 10 empty lines at the end of your input Tbvecs.txt) Are those zeros
still there in bvecs?
On Fri, 28 Sep 2012, Loi wrote:
> Hello again,
>
> I hav
Hello again,
I have tried removing the empty lines and rerunning trac-all -prep,
but the error persists.
Joy-Loi
On 9/28/12, Anastasia Yendiki wrote:
>
> There are 10 empty lines at the end of your Tbvecs.txt file. Can you try
> removing those and reruning?
>
> Hope this helps,
> a.y
>
> On Fr
There are 10 empty lines at the end of your Tbvecs.txt file. Can you try
removing those and reruning?
Hope this helps,
a.y
On Fri, 28 Sep 2012, Loi wrote:
> Hello again,
>
> Here is the configuration file and some variations of the bvec and
> bval files I have tried using.
>
> Also, I have not
Can you please send the original bvals and bvecs files (the ones that you
specify in the configuration file), and the configuration file itself?
Thanks!
a.y
On Thu, 27 Sep 2012, Loi wrote:
> Hello,
>
> I generate the files in Linux (using gedit) and they look normal (I
> have compared them to
Hello,
I generate the files in Linux (using gedit) and they look normal (I
have compared them to the files in the tutorial).
So far I have tried ending both with and without .txt, transposing the
files, changing to equal number of decimals and adding 'setenv LC_ALL
en_US' to the .tchsrc file.
Th
Hi Joy - How were your bvecs and bvals files generated? In the past some
people have had problems with files exported from Excel b/c it generates
text files with Windows-specific end-of-line characters that cannot be
read properly on Linux. Do the files look normal when you run "more" on
them
Dear FreeSurfers,
I am trying to run trac-all -prep on a single subject, and get the
following error:
dtifit -k
/usit/tsd/nevro-work/projects/Memory_project/TRACULA_test/TRACULA_data/id101/dmri/dwi.nii.gz
-m
/usit/tsd/nevro-work/projects/Memory_project/TRACULA_test/TRACULA_data/id101/dlabel/dif
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