Hi Katherine - The dlabel/ directory is created during the -prep step,
when the structural segmentation gets mapped from T1 to diffusion space.
However bedpost may still run fine without the dlabel/ directory. It seems
that the problem is fairly early in the -prep step. Any errors there?
Bes
Hi Katherine - Do the freesurfer segmentations look ok? What about the
registration from structural to diffusion? You can inspect those
quickly with:
freeview dmri/dtifit_FA.nii.gz
dlabel/diff/aparc+aseg.bbr.nii.gz:colormap=lut:opacity=.3
Hope this helps,
a.y
On Sun, 3 Jan 2016, Katherine
Hi Katherine - Have you looked at any of the intermediate images? Do they
look normal?
a.y
On Mon, 21 Dec 2015, Katherine Damme wrote:
> Hello Everyone!
>
> It looks as though my prep and bedp stages completed properly, but the prep
> stage ends in a segmentation
> errror.
>
> See attached
