Re: [Freesurfer] Tksurfer and Tkregister2 in Ubuntu 14.04

2015-07-16 Thread Reza Rajimehr
Hi Zeke, I am wondering if you had a chance to look at this. Thanks, Reza Hello Reza, > > > I wasn't able to replicate on Ubuntu 12 but it's entirely possible this but > exists only in Ubuntu 14. It's tough because we don't have test machines with > every Linux distro that people post to the li

Re: [Freesurfer] Tksurfer and Tkregister2 in Ubuntu 14.04

2015-06-12 Thread Reza Rajimehr
Thanks Doug! What is the estimated time for the release of Freesurfer/FS-FAST stable version 6, including a documentation to use it with freeview? Reza The new version of fsfast will use freeview for tksurfer/tkmedit/tkregister. In 5.3, you can use tkmeditfv and/or add -freeview to the tkmedit-s

Re: [Freesurfer] Tksurfer and Tkregister2 in Ubuntu 14.04

2015-06-12 Thread Reza Rajimehr
Thanks Zeke! I have replicated this problem in at least three machines running Ubuntu 14.04. Reza Hello Reza, I wasn't able to replicate on Ubuntu 12 but it's entirely possible this but exists only in Ubuntu 14. It's tough because we don't have test machines with every Linux distro that peop

Re: [Freesurfer] Tksurfer and Tkregister2 in Ubuntu 14.04

2015-06-12 Thread Z K
Hello Reza, I wasn't able to replicate on Ubuntu 12 but it's entirely possible this but exists only in Ubuntu 14. It's tough because we don't have test machines with every Linux distro that people post to the list about in order to attempt replicate. But I'll install Ubuntu 14 on a laptop afte

Re: [Freesurfer] Tksurfer and Tkregister2 in Ubuntu 14.04

2015-06-12 Thread Douglas Greve
The new version of fsfast will use freeview for tksurfer/tkmedit/tkregister. In 5.3, you can use tkmeditfv and/or add -freeview to the tkmedit-sess command line. I've put the 6.0 versions of tksurferfv and tksurfer-sess here ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/tksurferf

Re: [Freesurfer] Tksurfer and Tkregister2 in Ubuntu 14.04

2015-06-12 Thread Reza Rajimehr
Hi Bruce, I guess I will eventually move to freeview - though I am not quite sure if it is easy to use with FS-FAST. For now, all features of tksurfer/tkmedit/tkregister2 work fine for me, except the one described below. So it would be great if this bug, that is specific for ubuntu, is resolved

Re: [Freesurfer] Tksurfer and Tkregister2 in Ubuntu 14.04

2015-06-11 Thread Bruce Fischl
Hi Reza can you use freeview for what you want instead? tksurfer and tkmedit are deprecated cheers Bruce On Thu, 11 Jun 2015, Reza Rajimehr wrote: Hi, Is there any plan by the Freesurfer team to address this well-known bug? http://www.mail-archive.com/freesurfer%40nmr.mgh.harvard.edu/msg35

[Freesurfer] Tksurfer and Tkregister2 in Ubuntu 14.04

2015-06-11 Thread Reza Rajimehr
Hi, Is there any plan by the Freesurfer team to address this well-known bug? http://www.mail-archive.com/freesurfer%40nmr.mgh.harvard.edu/msg35938.html http://www.mail-archive.com/freesurfer%40nmr.mgh.harvard.edu/msg36193.html For now the only workaround is to enter values through command-line.