Re: [Freesurfer] The error about recon-all -s subjid -autorecon1

thanks Can you post these to the list? Nick would be able to help you, or others. On Mon, 19 Apr 2010, Antoine Leflon wrote: [Cacher les citations] Hi Bruce , I use a virtual machine , the Hard Disk simulated is 8GB but there're 1.7GB remaining on it . Is it enough ? Antoine Bruce Fisc

Re: [Freesurfer] The error about recon-all -s subjid -autorecon1

Hi Bruce , I use a virtual machine , the Hard Disk simulated is 8GB but there're 1.7GB remaining on it . Is it enough ? Antoine ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] The error about recon-all -s subjid -autorecon1

Hi Antoine is your partition full? Bruce On Mon, 19 Apr 2010, Antoine Leflon wrote: > sorry this error was : > > FINAL ITERATIVE TEMPLATE DEFORMATION > Compute Local values csf/gray > Fine Segmentation...40 iterations > mghRead: encountered error executing: 'zcat > /usr/local/free

Re: [Freesurfer] The error about recon-all -s subjid -autorecon1

sorry this error was : FINAL ITERATIVE TEMPLATE DEFORMATION Compute Local values csf/gray Fine Segmentation...40 iterations mghRead: encountered error executing: 'zcat /usr/local/freesurfer/subjects/s2/mri/T1.mgz',frame -1, errno 12 mri_strip_skull: done peeling brain Brai

Re: [Freesurfer] The error about recon-all -s subjid -autorecon1

sorry this error was : FINAL ITERATIVE TEMPLATE DEFORMATION Compute Local values csf/gray Fine Segmentation...40 iterations mghRead: encountered error executing: 'zcat /usr/local/freesurfer/subjects/s2/mri/T1.mgz',frame -1, errno 12 mri_strip_skull: done peeling brain Brai

Re: [Freesurfer] The error about recon-all -s subjid -autorecon1

sorry this error was : FINAL ITERATIVE TEMPLATE DEFORMATION Compute Local values csf/gray Fine Segmentation...40 iterations mghRead: encountered error executing: 'zcat /usr/local/freesurfer/subjects/s2/mri/T1.mgz',frame -1, errno 12 mri_strip_skull: done peeling brain Brai

Re: [Freesurfer] The error about recon-all -s subjid -autorecon1

Hi , I encountered the same error and I ran the command but the mgh file cannot be opened because it has a width of zero . Did you manage to fix this problem ? thanks , Antoine Leflon ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https:

Re: [Freesurfer] The error about recon-all -s subjid -autorecon1

Hi QQ, do you have enough free disk space? Can you try running: zcat /usr/local/freesurfer/subjects/am03/mri/T1.mgz > /usr/local/freesurfer/subjects/am03/mri/T1.mgh and see if it works? Bruce and see if it On Wed, 9 Sep 2009, QQ Liu wrote: > Hi all, > >In order to find the debug of th