Re: [Freesurfer] Thalamus segmentation - segmented thalamus looks bigger than brain.mgz would indicate

2022-08-31 Thread Douglas N. Greve
I don't think the brain.mgz is the right one to look at as it has already been partially segmented. Compare against the norm.mgz (or nu.mgz) instead. It is really hard to determine where the lateral boundaries are in thalamus On 8/31/2022 2:46 AM, Thalhammer, Melissa wrote: External

Re: [Freesurfer] Thalamus segmentation

2020-01-14 Thread Iglesias Gonzalez, Juan E.
Yes! Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com From: on behalf of sara ponticorvo Reply-To: Freesurfer support list Date: Tuesday, 14 January 2020 at 17:45 To: "freesurfer@nmr.mgh.harvard.edu" Subject: [Freesurfer

[Freesurfer] Thalamus segmentation

2020-01-14 Thread sara ponticorvo
External Email - Use Caution Hi Freesurfer expert, I have a question regarding the segmentation of the thalamus. After the “standard” segmentation from the recon-all (aseg), in label thalamus-Proper is included the medial geniculate body? Thanks, Sara _

Re: [Freesurfer] Thalamus segmentation {Disarmed}

2019-05-15 Thread Iglesias Gonzalez, Eugenio
CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com From: on behalf of 郑凤莲 Reply-To: Freesurfer support list Date: Wednesday, 15 May 2019 at 11:11 To: Freesurfer support list Subject: [Freesurfer] Thalamus segmentation {Disarmed} External Email - Use Caution Dear

[Freesurfer] Thalamus segmentation {Disarmed}

2019-05-15 Thread 郑凤莲
External Email - Use Caution Dear Experts, When I used the recent FS version for thalamus segmentation, I have segmented it sucessfully. However, in the .txt file, there are no the volume of lateraldorsal and reticular nuclei. Is there any error in my processing steps? I don't k