flirt is found in the directory $FSL_DIR, where FSL_DIR is the var set
when sourcing $FREESURFER_HOME/SetUpFreeSurfer.csh. What is the output
displayed after sourcing SetUpFreeSurfer.csh? And what distribution are
you using?
What is the mri_convert command line being used?
On Wed, 2006-03-15 at
I installed the freesurfer following exactly as the instructions on the
website. When I test it, "recon-all -s bert -all" doesn't work, it runs for
a few min. and shows "flirt: Command not found.
ERROR: running flirt". When I try to use my own data, convert dicom to mgt,
"mri_convert" command show
