Re: [Freesurfer] Talairach vs. MNI coordinates in FreeSurfer

2013-08-16 Thread Douglas Greve
Hi Juergen, yes use --nofixmni if you wan MNI coordinates. Note that there is no such thing as "MNI Talairach" coordinates. It is either MNI or Talairach, but not both! best doug On 8/14/13 8:50 AM, Jürgen Hänggi wrote: > Dear FS experts > > When extracting cluster information using mri_surfc

[Freesurfer] Talairach vs. MNI coordinates in FreeSurfer

2013-08-14 Thread Jürgen Hänggi
Dear FS experts When extracting cluster information using mri_surfcluster, there is a problem with the --fixmni option. By default, FixMNI is 1 but it reports Talairach coordinates as confirmed by tksurfer. When using the option --nofixmni (FixMNI is zero) it reports MNI Talairach coordinates. Th